Package: Hapi
Type: Package
Title: Inference of Chromosome-Length Haplotypes Using Genomic Data of
        Single Gamete Cells
Version: 0.0.3
Author: Ruidong Li, Han Qu, Jinfeng Chen, Shibo Wang, Le Zhang, Julong
        Wei, Sergio Pietro Ferrante, Mikeal L. Roose, Zhenyu Jia
Maintainer: Ruidong Li <rli012@ucr.edu>
Description: Inference of chromosome-length haplotypes using a few
        haploid gametes of an individual. The gamete genotype data may
        be generated from various platforms including genotyping arrays
        and sequencing even with low-coverage. Hapi simply takes
        genotype data of known hetSNPs in single gamete cells as input
        and report the high-resolution haplotypes as well as confidence
        of each phased hetSNPs. The package also includes a module
        allowing downstream analyses and visualization of identified
        crossovers in the gametes.
Depends: R (>= 3.4.0)
License: GPL-3
Encoding: UTF-8
LazyData: false
Imports: HMM, ggplot2
Suggests: knitr, testthat
VignetteBuilder: knitr
biocViews: SNP, GenomicVariation, Genetics, HiddenMarkovModel,
        SingleCell, Sequencing, Microarray
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2026-09-19 11:15:08 UTC; root
Repository: https://rli012.r-universe.dev
Date/Publication: 2018-07-28 14:10:07 UTC
RemoteUrl: https://github.com/cran/Hapi
RemoteRef: HEAD
RemoteSha: 6cd2fcf8cf9753a706a6e023114ced3332602022